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Sample GSM142168 Query DataSets for GSM142168
Status Public on Feb 14, 2007
Title Lung_Gavage_BENZ_2-86
Sample type RNA
 
Source name lung tissue, right lobe, gavage treatment, corn oil vehicle, 13 weeks, 5 days per week, benzene, 100 mg per kg
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 15
Units of Amount: ul
OD260: 10.869
OD280: 5.608
Ratio: 1.91
Dilution: 1:05
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 2-86
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Benzene, Treatment Repeat: 1, Units of Treatment Repeat: per day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Corn Oil, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 100, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Sample Type: tissue, Tissue: Lung, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Oct 24, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE6116 Transcriptional Biomarkers to Predict Female Mouse Lung Tumors in Rodent Cancer Bioassays - A 13 Chemical Training Set
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1423469_at 3.832821229
1449783_at 3.63776532
1422366_at 3.678779715
1445174_at 2.937470599
1453510_s_at 4.83862949
1420774_a_at 4.264599229
1451373_at 4.368703782
1443905_at 7.212854529
1439162_at 3.507300005
1452933_at 7.589572553
1440297_at 3.577574768
1419685_at 6.42076859
1418005_at 11.21242091
1441519_at 4.231876647
1430420_at 3.143938614
1429262_at 5.877390056
1427064_a_at 7.646109368
1420223_at 4.470731374
1418565_at 5.846631506
1426036_a_at 3.479991851

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM142168.CEL.gz 3.4 Mb (ftp)(http) CEL

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