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Sample GSM142175 Query DataSets for GSM142175
Status Public on Feb 14, 2007
Title Lung_Feed_MALA_2-36
Sample type RNA
 
Source name lung tissue, right lobe, feed treatment, 13 weeks, 7 days per week, malathion, 16000 ppm
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ul
OD260: 0.824
OD280: 0.484
Ratio: 1.93
Dilution: 1:05
RNA Integrity Number: 7.9
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 2-36
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Malathion, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Vehicle for Chemical: Rodent Chow, Route of Exposure: Diet, Dose or Concentration: 16000, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Sample Type: tissue, Tissue: Lung, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Oct 24, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE6116 Transcriptional Biomarkers to Predict Female Mouse Lung Tumors in Rodent Cancer Bioassays - A 13 Chemical Training Set
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1448119_at 8.752660632
1442707_at 3.481800137
1450308_a_at 6.105968186
1440901_at 4.163685293
1435466_at 4.788101001
1437619_x_at 4.018087533
1429838_at 4.022896186
1437105_at 7.529335045
1433202_at 3.615726173
1432047_at 3.815140261
1427599_at 3.619588322
1426532_at 7.744352865
1438643_at 5.949521329
1433775_at 8.819283438
1416881_at 10.00008891
1451880_at 5.081590804
1428105_at 3.631870686
1438140_a_at 6.599040699
1416330_at 11.99165633
1442076_at 5.221683992

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM142175.CEL.gz 3.3 Mb (ftp)(http) CEL

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