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Sample GSM142367 Query DataSets for GSM142367
Status Public on Aug 08, 2007
Title ApoE-/+, offspring normocholesterolemic wt mother, Apo-/- father LUMC_HKG_MOUSE_430_2
Sample type RNA
 
Source name carotic artery
Organism Mus musculus
Characteristics genotype/variation (offspring): ApoE-/+
cross: normocholesterolemic wt mother, ApoE-/- father
Biomaterial provider Anatomy, Fanneke Alkemade
Treatment protocol Disection, immediate storage in liquid nitrogen
Extracted molecule total RNA
Extraction protocol RNAqueous-Micro
Label Biotin
Label protocol 2 cycle
AmbionMessageAmpIIaRNAAmplification kit, oligodT
AmbionMessageAmpII-Biotin Enhanced
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description ApoE-/+, offspring normocholesterolemic wt mother, ApoE-/- father
Data processing MAS5, GCOS
 
Submission date Oct 25, 2006
Last update date Aug 28, 2018
Contact name Anja Schiel
E-mail(s) anja.schiel@medisin.uio.no
Organization name Leiden University Medical Center
Department Human Clinical Genetics
Lab Frants
Street address Einthovenweg 20
City Leiden
ZIP/Postal code 2300RC
Country Netherlands
 
Platform ID GPL1261
Series (1)
GSE6134 Offsprings of crosses between hypercholesterolemic and normocholesterolemic parents LUMC-HKG-ApoE-Atherosclerosis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE as derived by MAS5
ABS-CALL present absent call MAS5
DETECTION P-VALUE as derived by MAS5

Data table
ID_REF VALUE ABS-CALL DETECTION P-VALUE
AFFX-BioB-5_at 160.9 P 0.001102
AFFX-BioB-M_at 240 P 4.4e-05
AFFX-BioB-3_at 124.7 P 5.2e-05
AFFX-BioC-5_at 424.6 P 4.4e-05
AFFX-BioC-3_at 576.5 P 4.4e-05
AFFX-BioDn-5_at 996.3 P 4.4e-05
AFFX-BioDn-3_at 1740 P 4.4e-05
AFFX-CreX-5_at 5486.8 P 5.2e-05
AFFX-CreX-3_at 6367.9 P 4.4e-05
AFFX-DapX-5_at 1.3 A 0.440641
AFFX-DapX-M_at 6.9 A 0.39692
AFFX-DapX-3_at 1.2 A 0.737173
AFFX-LysX-5_at 0.6 A 0.945787
AFFX-LysX-M_at 0.6 A 0.976081
AFFX-LysX-3_at 5.4 M 0.053906
AFFX-PheX-5_at 0.7 A 0.945802
AFFX-PheX-M_at 0.4 A 0.976071
AFFX-PheX-3_at 3.6 A 0.354453
AFFX-ThrX-5_at 6.9 A 0.313723
AFFX-ThrX-M_at 0.4 A 0.83416

Total number of rows: 45101

Table truncated, full table size 1198 Kbytes.




Supplementary file Size Download File type/resource
GSM142367.CEL.gz 3.7 Mb (ftp)(http) CEL

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