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Sample GSM1434998 Query DataSets for GSM1434998
Status Public on Jul 12, 2014
Title Germ free mouse, replicate 1
Sample type RNA
 
Source name smooth muscle
Organism Mus musculus
Characteristics group: GF
tissue: smooth muscle of proximal colon
genotype: wild type
strain: C57Bl/6
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Prox1
Data processing raw data were processed using the R/Bioconductor package limma for background correction and quantile normalization
 
Submission date Jul 10, 2014
Last update date Jul 12, 2014
Contact name Yong Huang
E-mail(s) yh9fj@virginia.edu
Phone (434) 243-0842
Organization name University of Viginia
Department Medicine
Street address 1340 Jefferson Park Ave
City Charlottesville
State/province VA
ZIP/Postal code 22908
Country USA
 
Platform ID GPL6885
Series (1)
GSE59320 Mutual reinforcement of pathophysiological host-microbe interactions that maintain steady state conditions of disease

Data table header descriptions
ID_REF
VALUE background-corrected, quantile-normalized and log2-transformed

Data table
ID_REF VALUE
ILMN_1212612 5.185263068
ILMN_1212619 7.417826115
ILMN_1212632 5.15206546
ILMN_1212636 10.36493828
ILMN_1212637 8.369447381
ILMN_1212645 5.048550162
ILMN_1212648 7.786555497
ILMN_1212653 7.261272189
ILMN_1212672 7.300209505
ILMN_1212682 4.789831957
ILMN_1212692 10.07353909
ILMN_1212693 6.989323488
ILMN_1212702 11.16669465
ILMN_1212703 7.036345307
ILMN_1212717 6.769217942
ILMN_1212720 6.731955318
ILMN_1212759 6.826588156
ILMN_1212791 5.43674696
ILMN_1212794 7.315404296
ILMN_1212823 4.676813227

Total number of rows: 16029

Table truncated, full table size 389 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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