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Sample GSM1435008 Query DataSets for GSM1435008
Status Public on Jul 12, 2014
Title Colonized with microbiota from control mouse,, replicate 3
Sample type RNA
 
Source name smooth muscle
Organism Mus musculus
Characteristics group: C/-Lop
tissue: smooth muscle of proximal colon
genotype: wild type
strain: C57Bl/6
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Prox11
Data processing raw data were processed using the R/Bioconductor package limma for background correction and quantile normalization
 
Submission date Jul 10, 2014
Last update date Jul 12, 2014
Contact name Yong Huang
E-mail(s) yh9fj@virginia.edu
Phone (434) 243-0842
Organization name University of Viginia
Department Medicine
Street address 1340 Jefferson Park Ave
City Charlottesville
State/province VA
ZIP/Postal code 22908
Country USA
 
Platform ID GPL6885
Series (1)
GSE59320 Mutual reinforcement of pathophysiological host-microbe interactions that maintain steady state conditions of disease

Data table header descriptions
ID_REF
VALUE background-corrected, quantile-normalized and log2-transformed

Data table
ID_REF VALUE
ILMN_1212612 4.980051162
ILMN_1212619 6.950628748
ILMN_1212632 5.155772249
ILMN_1212636 10.4413329
ILMN_1212637 8.583752688
ILMN_1212645 4.660500608
ILMN_1212648 7.497527511
ILMN_1212653 6.714116643
ILMN_1212672 7.296256599
ILMN_1212682 4.663205438
ILMN_1212692 10.30490384
ILMN_1212693 6.947235071
ILMN_1212702 10.3874553
ILMN_1212703 7.063799474
ILMN_1212717 6.353146753
ILMN_1212720 7.017260754
ILMN_1212759 7.102992638
ILMN_1212791 5.111843677
ILMN_1212794 7.677169029
ILMN_1212823 5.111843677

Total number of rows: 16029

Table truncated, full table size 389 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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