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Sample GSM1436406 Query DataSets for GSM1436406
Status Public on Jul 16, 2014
Title ST-01013006_S-001146773_8450989129_F
Sample type RNA
 
Source name Mouse lung tissue
Organism Mus musculus
Characteristics treatment: untreated
time collected: 20
Extracted molecule total RNA
Extraction protocol For mRNA isolation lung tissue was immersed in RNAlater (Qiagen) and total RNA was then extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's instructions. RNA quality (RIN>=7) was confirmed using an Agilent 2100 Bioanalyzer.
Label Cy3
Label protocol RNA from all biological samples was labeled at once using the Ambion TotalPrep-96 RNA Amplification Kit according to the manufacturer's instructions.
 
Hybridization protocol The samples were then blinded, randomized to chip position and hybridized to the Illumina MouseRef-8 v2.0 Expression BeadChips. All chips had one array dedicated as an RNA control.
Scan protocol The chips were read using standard illumina protocols using an Illumina iScan reader.
Data processing VSN normalized, background corrected
 
Submission date Jul 14, 2014
Last update date Jul 16, 2014
Contact name Jen-hwa Chu
E-mail(s) jen-hwa.chu@yale.edu
Organization name Yale University School of Medicine
Department Pulmonary, Critical Care and Sleep Medicine
Street address PO Box 208057
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL6885
Series (2)
GSE59404 CIRCADIAN RHYTHM REPROGRAMMING DURING LUNG INFLAMMATION/ Microarray Experiment #2
GSE59444 CIRCADIAN RHYTHM REPROGRAMMING DURING LUNG INFLAMMATION

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 12.5360547596377 4972.4 909.951721268772 0 40
ILMN_2721178 10.3402799386542 1173.4 327.384 0 36
ILMN_3033922 9.59833852639049 746.9 149.306317759832 0 43
ILMN_3092673 13.1878268885205 7747.8 1314.12044820823 0 31
ILMN_2816356 4.99832447069756 138.2 37.99 0.01003 25
ILMN_2808939 9.8290669367494 856.9 122.893428697388 0 33
ILMN_2634564 9.33451773542233 640.9 112.455 0 25
ILMN_2737647 3.73713493715094 117.5 39.3356014826264 0.09148 34
ILMN_2734484 8.9360185515674 513.4 136.194811208063 0 26
ILMN_2952292 6.76144309076636 201.4 63.8139479032601 0 27
ILMN_2699078 3.36379913868306 112.3 44.246589021076 0.18296 40
ILMN_1213681 10.0018597260286 951.6 194.210442067362 0 37
ILMN_2735413 2.79255811271712 104.8 28.5144476537772 0.34962 29
ILMN_2735415 4.39801459725181 127.5 45.1259343615177 0.02381 28
ILMN_2891688 10.1864277341252 1066.1 257.368857509995 0 39
ILMN_2637698 11.0994485053127 1908 245.36647494717 0 37
ILMN_2674228 8.32979189687099 375.9 115.104435544422 0 42
ILMN_2601546 3.06418810521935 108.3 33.1195149119065 0.24436 28
ILMN_1230831 1.87839130005742 94 30.2037564054539 0.77318 21
ILMN_2848071 2.91790232152155 106.4 35.8486418152766 0.30075 20

Total number of rows: 25697

Table truncated, full table size 1509 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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