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Sample GSM1436415 Query DataSets for GSM1436415
Status Public on Jul 16, 2014
Title ST-01013012_S-001146792_8450989133_G
Sample type RNA
 
Source name Mouse lung tissue
Organism Mus musculus
Characteristics treatment: untreated
time collected: 44
Extracted molecule total RNA
Extraction protocol For mRNA isolation lung tissue was immersed in RNAlater (Qiagen) and total RNA was then extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's instructions. RNA quality (RIN>=7) was confirmed using an Agilent 2100 Bioanalyzer.
Label Cy3
Label protocol RNA from all biological samples was labeled at once using the Ambion TotalPrep-96 RNA Amplification Kit according to the manufacturer's instructions.
 
Hybridization protocol The samples were then blinded, randomized to chip position and hybridized to the Illumina MouseRef-8 v2.0 Expression BeadChips. All chips had one array dedicated as an RNA control.
Scan protocol The chips were read using standard illumina protocols using an Illumina iScan reader.
Data processing VSN normalized, background corrected
 
Submission date Jul 14, 2014
Last update date Jul 16, 2014
Contact name Jen-hwa Chu
E-mail(s) jen-hwa.chu@yale.edu
Organization name Yale University School of Medicine
Department Pulmonary, Critical Care and Sleep Medicine
Street address PO Box 208057
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL6885
Series (2)
GSE59404 CIRCADIAN RHYTHM REPROGRAMMING DURING LUNG INFLAMMATION/ Microarray Experiment #2
GSE59444 CIRCADIAN RHYTHM REPROGRAMMING DURING LUNG INFLAMMATION

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 12.1897889514888 2617 515.468298928266 0 38
ILMN_2721178 10.2699781321454 763.8 146.919420091423 0 40
ILMN_3033922 10.3289997142676 791.6 178.466302029263 0 40
ILMN_3092673 12.8287267897932 4020.5 1072.4208597822 0 41
ILMN_2816356 3.32432692024281 97.2 32.8126077598231 0.22682 28
ILMN_2808939 9.37188425110461 455.3 135.691205905173 0 35
ILMN_2634564 9.00350408536792 374.8 105.121386292229 0 26
ILMN_2737647 4.31776313535373 106.8 46.3444056602304 0.03885 34
ILMN_2734484 8.7794815925788 335 92.2638648117452 0 30
ILMN_2952292 6.82962302132655 159.4 51.4439329756192 0 40
ILMN_2699078 1.24194411172115 82 25.6935344980016 0.89474 35
ILMN_1213681 9.43702830978306 471.8 135.536970683279 0 38
ILMN_2735413 3.38046147363453 97.7 24.1547564881122 0.21554 21
ILMN_2735415 4.59835270706608 109.9 35.0104258757302 0.02632 30
ILMN_2891688 9.63038507143337 525.4 118.990719369201 0 26
ILMN_2637698 10.6681634202293 975.4 209.522267546913 0 38
ILMN_2674228 8.7089781327222 323.7 112.151871081137 0 43
ILMN_2601546 3.88458745433906 102.4 37.4977598797581 0.08647 44
ILMN_1230831 2.68272098162638 91.8 30.6544931779992 0.47368 32
ILMN_2848071 5.00351707184037 114.9 45.9246854752431 0.01504 29

Total number of rows: 25697

Table truncated, full table size 1501 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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