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Sample GSM1445861 Query DataSets for GSM1445861
Status Public on Dec 26, 2018
Title WT_rep1
Sample type RNA
 
Source name mouse hypothalamus
Organism Mus musculus
Characteristics background strain: C57BL/6
tissue: hypothalamus
age: 13 weeks
genotype/variation: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy Mini Kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
E
Data processing The data were normalised using a robust spline normalization (RSN) with lumi (v2.10.0) in R (v2.15.0).
 
Submission date Jul 24, 2014
Last update date Dec 26, 2018
Contact name Xia Yang
E-mail(s) xyang123@ucla.edu
Organization name UCLA
Street address 610 Charles E. Young Dr. East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (2)
GSE59742 Gene Expression Profile in the Hypothalamus of Male Bgn_KO and WT Mice at 13 Weeks Old
GSE64809 Gene Expressoin Profile in the Hypothalamus and Liver of Male Bgn_KO, FMOD_KO and WT Mice at 13 Weeks Old, With and Without DHA (omega-3) Treatment

Data table header descriptions
ID_REF
VALUE robust spline normalization (RSN)
E.Detection Pval

Data table
ID_REF VALUE E.Detection Pval
ILMN_2896528 5154.222761 0
ILMN_2721178 1182.860817 0
ILMN_3033922 2298.386292 0
ILMN_3092673 8333.378157 0
ILMN_2816356 189.4677144 0.01754386
ILMN_2808939 1851.925124 0
ILMN_2634564 308.5955919 0
ILMN_2737647 175.2144478 0.0952381
ILMN_2734484 1179.013336 0
ILMN_2952292 303.653423 0
ILMN_2699078 154.9055527 0.6879699
ILMN_1213681 473.9724009 0
ILMN_2735413 162.5981727 0.3972431
ILMN_2735415 174.2214608 0.1102757
ILMN_2891688 1265.331427 0
ILMN_2637698 2636.328487 0
ILMN_2674228 596.2085293 0
ILMN_2601546 175.2287377 0.0952381
ILMN_1230831 162.0642727 0.4223058
ILMN_2848071 199.5258254 0.003759399

Total number of rows: 25697

Table truncated, full table size 781 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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