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Sample GSM1462663 Query DataSets for GSM1462663
Status Public on Sep 09, 2015
Title MTS21 (KHR-NICD)
Sample type RNA
 
Source name KHR-NICD tumor biological replicate 6
Organism Mus musculus
Characteristics tissue: Oral tumor tissue
Treatment protocol At the time of isolation, tumors were placed in Trizol, snap frozen and stored at -80 C.
Growth protocol Oral tumors were allowed to grow for 21d and were isolated.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treated. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Biological Replicate 6
Data processing The data were normalised using quantile normalisation with background subtrations in Genome Studio. Data was exported and analyzed by Partek Genomics Suite 6.
 
Submission date Jul 31, 2014
Last update date Sep 09, 2015
Contact name Michael Spiotto
E-mail(s) mspiotto@radonc.uchicago.edu
Organization name The University of Chicago
Department Radiation Oncology
Lab KCBD 6142
Street address 900 E. 57th St
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL6885
Series (1)
GSE59950 Expression analysis of KHR and KHR-NICD oral tumors

Data table header descriptions
ID_REF
VALUE quantile normalized
MTS21 (KHR-NICD).Avg_NBEADS
MTS21 (KHR-NICD).BEAD_STDERR
MTS21 (KHR-NICD).Detection Pval

Data table
ID_REF VALUE MTS21 (KHR-NICD).Avg_NBEADS MTS21 (KHR-NICD).BEAD_STDERR MTS21 (KHR-NICD).Detection Pval
ILMN_2896528 1756.853 34 51.18287 0
ILMN_2721178 274.3407 34 11.57305 0
ILMN_3033922 314.9049 49 13.47956 0
ILMN_3092673 2965.431 38 79.16219 0
ILMN_2816356 62.78151 32 6.279126 0.001253133
ILMN_2808939 1990.668 51 57.28016 0
ILMN_2634564 440.9268 31 25.57847 0
ILMN_2737647 16.2642 40 4.704224 0.1015038
ILMN_2734484 148.4547 36 15.05837 0
ILMN_2952292 130.9226 42 8.693375 0
ILMN_2699078 -10.33281 43 4.264831 0.8233083
ILMN_1213681 249.565 37 11.21549 0
ILMN_2735413 5.573257 31 6.831985 0.2656642
ILMN_2735415 -0.3741171 25 5.190476 0.4197995
ILMN_2891688 425.6068 34 25.29607 0
ILMN_2637698 1085.209 22 57.74485 0
ILMN_2674228 234.3083 48 9.558182 0
ILMN_2601546 12.89945 38 5.412028 0.1340852
ILMN_1230831 8.983698 32 5.155954 0.1992481
ILMN_2848071 32.9377 31 8.353417 0.0112782

Total number of rows: 25697

Table truncated, full table size 1040 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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