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Sample GSM1462811 Query DataSets for GSM1462811
Status Public on Aug 01, 2014
Title Wild type_lung_2
Sample type RNA
Source name lung from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: lung
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 9.208367809
ILMN_1212619 8.900958709
ILMN_1212632 8.500701287
ILMN_1212636 11.77896444
ILMN_1212637 9.2448181
ILMN_1212648 10.10719554
ILMN_1212653 9.526802711
ILMN_1212672 9.506640188
ILMN_1212692 9.674954941
ILMN_1212693 10.37025984
ILMN_1212702 16.05905722
ILMN_1212703 8.473095265
ILMN_1212717 8.304419471
ILMN_1212720 8.863358215
ILMN_1212759 9.301088593
ILMN_1212794 10.24333963
ILMN_1212835 9.151794775
ILMN_1212875 9.441453877
ILMN_1212894 11.46601297
ILMN_1212902 10.00449432

Total number of rows: 15239

Table truncated, full table size 357 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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