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Sample GSM1462812 Query DataSets for GSM1462812
Status Public on Aug 01, 2014
Title Wild type_lung_3
Sample type RNA
Source name lung from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: lung
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 9.33917243
ILMN_1212619 8.979289089
ILMN_1212632 8.476173129
ILMN_1212636 11.88402872
ILMN_1212637 9.451014686
ILMN_1212648 10.07746502
ILMN_1212653 9.733577202
ILMN_1212672 9.508841502
ILMN_1212692 9.867928553
ILMN_1212693 10.30825938
ILMN_1212702 16.05905722
ILMN_1212703 8.438110257
ILMN_1212717 8.254061648
ILMN_1212720 8.832190433
ILMN_1212759 9.497681351
ILMN_1212794 10.25860902
ILMN_1212835 9.262142582
ILMN_1212875 9.350550692
ILMN_1212894 11.53630243
ILMN_1212902 9.948043806

Total number of rows: 15239

Table truncated, full table size 357 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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