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Sample GSM1462813 Query DataSets for GSM1462813
Status Public on Aug 01, 2014
Title Cmah KO_lung_1
Sample type RNA
 
Source name lung from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: lung
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
E-mail(s) sun-76@daum.net
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212612 9.614695675
ILMN_1212619 8.914305495
ILMN_1212632 8.260975971
ILMN_1212636 11.99511637
ILMN_1212637 9.405844942
ILMN_1212648 10.03662103
ILMN_1212653 9.638440168
ILMN_1212672 9.613784892
ILMN_1212692 9.540313991
ILMN_1212693 10.42641922
ILMN_1212702 16.05905722
ILMN_1212703 8.447520378
ILMN_1212717 8.351826545
ILMN_1212720 8.866210019
ILMN_1212759 9.621099168
ILMN_1212794 10.40052405
ILMN_1212835 9.026725931
ILMN_1212875 9.410299937
ILMN_1212894 11.44341162
ILMN_1212902 10.15150317

Total number of rows: 15239

Table truncated, full table size 357 Kbytes.




Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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