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Sample GSM1462815 Query DataSets for GSM1462815
Status Public on Aug 01, 2014
Title Cmah KO_lung_3
Sample type RNA
Source name lung from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: lung
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 9.556796385
ILMN_1212619 8.978118437
ILMN_1212632 8.383822424
ILMN_1212636 12.2433922
ILMN_1212637 9.588699834
ILMN_1212648 10.0455135
ILMN_1212653 9.666046607
ILMN_1212672 9.444380949
ILMN_1212692 9.404530706
ILMN_1212693 10.35225498
ILMN_1212702 16.05905722
ILMN_1212703 8.431844951
ILMN_1212717 8.311570247
ILMN_1212720 8.807409451
ILMN_1212759 9.540313991
ILMN_1212794 10.52471914
ILMN_1212835 9.046493698
ILMN_1212875 9.341846835
ILMN_1212894 11.28047056
ILMN_1212902 10.07235376

Total number of rows: 15239

Table truncated, full table size 357 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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