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Sample GSM1462816 Query DataSets for GSM1462816
Status Public on Aug 01, 2014
Title Wild type_kidney_1
Sample type RNA
 
Source name kidney from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: kidney
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
E-mail(s) sun-76@daum.net
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212612 8.760738906
ILMN_1212619 9.098880031
ILMN_1212632 8.457563171
ILMN_1212636 11.85808424
ILMN_1212637 9.606705936
ILMN_1212648 9.584787883
ILMN_1212653 8.411217759
ILMN_1212672 9.488577334
ILMN_1212692 9.039521998
ILMN_1212693 9.303383991
ILMN_1212702 15.46363798
ILMN_1212703 8.865831818
ILMN_1212717 8.160203219
ILMN_1212720 8.890903745
ILMN_1212759 9.787313964
ILMN_1212794 9.348778862
ILMN_1212835 8.010414625
ILMN_1212875 9.412323167
ILMN_1212894 10.67974472
ILMN_1212902 11.11195994

Total number of rows: 15239

Table truncated, full table size 353 Kbytes.




Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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