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Sample GSM1462817 Query DataSets for GSM1462817
Status Public on Aug 01, 2014
Title Wild type_kidney_2
Sample type RNA
Source name kidney from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: kidney
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 8.777754048
ILMN_1212619 9.421910639
ILMN_1212632 8.619226646
ILMN_1212636 11.98773358
ILMN_1212637 9.560398216
ILMN_1212648 9.60323125
ILMN_1212653 8.540355002
ILMN_1212672 9.310806983
ILMN_1212692 9.004727732
ILMN_1212693 9.412766956
ILMN_1212702 15.39078389
ILMN_1212703 8.873378487
ILMN_1212717 8.131874962
ILMN_1212720 8.790765523
ILMN_1212759 9.583745622
ILMN_1212794 9.24343401
ILMN_1212835 8.010414625
ILMN_1212875 9.395150223
ILMN_1212894 10.62636034
ILMN_1212902 11.30993577

Total number of rows: 15239

Table truncated, full table size 353 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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