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Sample GSM1462818 Query DataSets for GSM1462818
Status Public on Aug 01, 2014
Title Wild type_kidney_3
Sample type RNA
Source name kidney from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: kidney
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 8.773862242
ILMN_1212619 9.892951864
ILMN_1212632 8.84547071
ILMN_1212636 12.43072329
ILMN_1212637 9.543324101
ILMN_1212648 9.517908505
ILMN_1212653 8.258180714
ILMN_1212672 9.586452516
ILMN_1212692 9.229663141
ILMN_1212693 9.126317509
ILMN_1212702 15.30672575
ILMN_1212703 8.985168427
ILMN_1212717 8.212683463
ILMN_1212720 8.887103509
ILMN_1212759 9.964950479
ILMN_1212794 9.1522283
ILMN_1212835 8.376321643
ILMN_1212875 9.386845966
ILMN_1212894 10.55779697
ILMN_1212902 11.18462196

Total number of rows: 15239

Table truncated, full table size 353 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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