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Sample GSM1462819 Query DataSets for GSM1462819
Status Public on Aug 01, 2014
Title Cmah KO_kidney_1
Sample type RNA
Source name kidney from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: kidney
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 8.811456152
ILMN_1212619 9.459264114
ILMN_1212632 8.426271744
ILMN_1212636 12.11727167
ILMN_1212637 9.653776958
ILMN_1212648 9.686277423
ILMN_1212653 8.226910106
ILMN_1212672 9.490917446
ILMN_1212692 8.874212064
ILMN_1212693 9.287178599
ILMN_1212702 15.41797945
ILMN_1212703 8.842263852
ILMN_1212717 8.162642163
ILMN_1212720 8.532764095
ILMN_1212759 9.579320621
ILMN_1212794 9.104017759
ILMN_1212835 8.401340911
ILMN_1212875 9.427809792
ILMN_1212894 10.68526638
ILMN_1212902 11.27060574

Total number of rows: 15239

Table truncated, full table size 353 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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