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Sample GSM1462820 Query DataSets for GSM1462820
Status Public on Aug 01, 2014
Title Cmah KO_kidney_2
Sample type RNA
Source name kidney from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: kidney
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 8.694110771
ILMN_1212619 10.12658941
ILMN_1212632 8.732661697
ILMN_1212636 12.17397866
ILMN_1212637 9.924944745
ILMN_1212648 9.549719221
ILMN_1212653 8.253801797
ILMN_1212672 9.378930398
ILMN_1212692 9.408610963
ILMN_1212693 9.255186683
ILMN_1212702 14.20713408
ILMN_1212703 8.89709054
ILMN_1212717 8.063393463
ILMN_1212720 8.750523491
ILMN_1212759 9.826989332
ILMN_1212794 9.10000816
ILMN_1212835 8.346983474
ILMN_1212875 9.894968592
ILMN_1212894 10.56092985
ILMN_1212902 11.25224182

Total number of rows: 15239

Table truncated, full table size 353 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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