NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1462821 Query DataSets for GSM1462821
Status Public on Aug 01, 2014
Title Cmah KO_kidney_3
Sample type RNA
 
Source name kidney from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: kidney
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
E-mail(s) sun-76@daum.net
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212612 8.867286514
ILMN_1212619 10.34074807
ILMN_1212632 8.673964221
ILMN_1212636 12.28534008
ILMN_1212637 9.889562167
ILMN_1212648 9.574873273
ILMN_1212653 8.259089627
ILMN_1212672 9.28653928
ILMN_1212692 9.378528855
ILMN_1212693 9.214399592
ILMN_1212702 14.26318434
ILMN_1212703 8.908837621
ILMN_1212717 8.235550844
ILMN_1212720 8.760185455
ILMN_1212759 9.855737867
ILMN_1212794 9.218314835
ILMN_1212835 8.186789156
ILMN_1212875 9.952322087
ILMN_1212894 10.59128858
ILMN_1212902 11.27930056

Total number of rows: 15239

Table truncated, full table size 353 Kbytes.




Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap