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Sample GSM1462822 Query DataSets for GSM1462822
Status Public on Aug 01, 2014
Title Wild type_heart_1
Sample type RNA
 
Source name heart from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: heart
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
E-mail(s) sun-76@daum.net
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212612 11.91463933
ILMN_1212619 8.313237688
ILMN_1212632 8.201745179
ILMN_1212636 12.04317417
ILMN_1212637 9.067166458
ILMN_1212648 9.493423009
ILMN_1212653 8.738082968
ILMN_1212672 9.366243884
ILMN_1212692 null
ILMN_1212693 8.757061705
ILMN_1212702 15.89588792
ILMN_1212703 8.60151472
ILMN_1212717 null
ILMN_1212720 8.837059783
ILMN_1212759 9.21054594
ILMN_1212794 9.442556307
ILMN_1212835 null
ILMN_1212875 10.65481024
ILMN_1212894 9.689991625
ILMN_1212902 9.974341903

Total number of rows: 15239

Table truncated, full table size 344 Kbytes.




Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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