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Sample GSM1462823 Query DataSets for GSM1462823
Status Public on Aug 01, 2014
Title Wild type_heart_2
Sample type RNA
Source name heart from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: heart
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 12.14806686
ILMN_1212619 8.179760916
ILMN_1212632 8.232443633
ILMN_1212636 12.23087002
ILMN_1212637 9.134904615
ILMN_1212648 9.583339527
ILMN_1212653 8.782964475
ILMN_1212672 9.258204274
ILMN_1212692 null
ILMN_1212693 8.820656324
ILMN_1212702 16.02734287
ILMN_1212703 8.399352132
ILMN_1212717 null
ILMN_1212720 8.928687136
ILMN_1212759 9.11839213
ILMN_1212794 9.371892854
ILMN_1212835 null
ILMN_1212875 10.53098125
ILMN_1212894 9.73188802
ILMN_1212902 9.906005972

Total number of rows: 15239

Table truncated, full table size 344 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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