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Sample GSM1462824 Query DataSets for GSM1462824
Status Public on Aug 01, 2014
Title Wild type_heart_3
Sample type RNA
Source name heart from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: heart
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 12.0948453
ILMN_1212619 8.284097346
ILMN_1212632 8.325261675
ILMN_1212636 12.16293942
ILMN_1212637 9.261335429
ILMN_1212648 9.396216835
ILMN_1212653 8.687863382
ILMN_1212672 9.310973032
ILMN_1212692 null
ILMN_1212693 8.706071176
ILMN_1212702 16.05239717
ILMN_1212703 8.58938243
ILMN_1212717 null
ILMN_1212720 8.7859018
ILMN_1212759 9.045738505
ILMN_1212794 9.532039816
ILMN_1212835 null
ILMN_1212875 10.40697098
ILMN_1212894 9.697966753
ILMN_1212902 9.961636856

Total number of rows: 15239

Table truncated, full table size 344 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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