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Sample GSM1462825 Query DataSets for GSM1462825
Status Public on Aug 01, 2014
Title Cnah KO_heart_1
Sample type RNA
Source name heart from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: heart
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 12.13280912
ILMN_1212619 8.21066761
ILMN_1212632 8.304710439
ILMN_1212636 12.3616054
ILMN_1212637 9.115907144
ILMN_1212648 9.447014914
ILMN_1212653 8.408569851
ILMN_1212672 9.413305226
ILMN_1212692 null
ILMN_1212693 8.834768144
ILMN_1212702 15.95969421
ILMN_1212703 8.506590769
ILMN_1212717 null
ILMN_1212720 9.034426023
ILMN_1212759 9.067166458
ILMN_1212794 9.213845917
ILMN_1212835 null
ILMN_1212875 10.34450009
ILMN_1212894 9.691155564
ILMN_1212902 9.892435224

Total number of rows: 15239

Table truncated, full table size 344 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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