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Sample GSM1462826 Query DataSets for GSM1462826
Status Public on Aug 01, 2014
Title Cnah KO_heart_2
Sample type RNA
 
Source name heart from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: heart
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
E-mail(s) sun-76@daum.net
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212612 12.35908735
ILMN_1212619 8.261936391
ILMN_1212632 8.408569851
ILMN_1212636 12.25308064
ILMN_1212637 8.937046547
ILMN_1212648 9.345058004
ILMN_1212653 8.464843652
ILMN_1212672 9.403459467
ILMN_1212692 null
ILMN_1212693 8.710056083
ILMN_1212702 15.89588792
ILMN_1212703 8.766808973
ILMN_1212717 null
ILMN_1212720 9.096767328
ILMN_1212759 9.195721857
ILMN_1212794 9.133702181
ILMN_1212835 null
ILMN_1212875 10.00305228
ILMN_1212894 9.744314929
ILMN_1212902 9.940719086

Total number of rows: 15239

Table truncated, full table size 344 Kbytes.




Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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