NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1462827 Query DataSets for GSM1462827
Status Public on Aug 01, 2014
Title Cnah KO_heart_3
Sample type RNA
 
Source name heart from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: heart
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
E-mail(s) sun-76@daum.net
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212612 12.30232062
ILMN_1212619 8.330560641
ILMN_1212632 8.367971263
ILMN_1212636 12.31561415
ILMN_1212637 9.154477053
ILMN_1212648 9.335057707
ILMN_1212653 8.496240693
ILMN_1212672 9.323204541
ILMN_1212692 null
ILMN_1212693 8.692611434
ILMN_1212702 15.03603356
ILMN_1212703 8.648632132
ILMN_1212717 null
ILMN_1212720 8.920272257
ILMN_1212759 9.164588527
ILMN_1212794 9.207893787
ILMN_1212835 null
ILMN_1212875 10.0238867
ILMN_1212894 9.685448062
ILMN_1212902 10.04150333

Total number of rows: 15239

Table truncated, full table size 344 Kbytes.




Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap