GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1462828 Query DataSets for GSM1462828
Status Public on Aug 01, 2014
Title Wild type_liver _1
Sample type RNA
Source name liver from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: liver
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 null
ILMN_1212619 null
ILMN_1212632 8.310419046
ILMN_1212636 11.24635761
ILMN_1212637 9.932495167
ILMN_1212648 9.095495573
ILMN_1212653 null
ILMN_1212672 9.319717689
ILMN_1212692 null
ILMN_1212693 9.493593833
ILMN_1212702 15.44210467
ILMN_1212703 8.861779647
ILMN_1212717 8.244649967
ILMN_1212720 8.546487375
ILMN_1212759 8.611680564
ILMN_1212794 9.013914846
ILMN_1212835 10.12144739
ILMN_1212875 11.05934086
ILMN_1212894 9.756054183
ILMN_1212902 10.64843653

Total number of rows: 15239

Table truncated, full table size 341 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap