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Sample GSM1462829 Query DataSets for GSM1462829
Status Public on Aug 01, 2014
Title Wild type_liver _2
Sample type RNA
Source name liver from control mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
tissue: liver
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
VALUE quantile normalized signal

Data table
ILMN_1212612 null
ILMN_1212619 null
ILMN_1212632 8.333959382
ILMN_1212636 11.25015785
ILMN_1212637 10.21436729
ILMN_1212648 9.024793846
ILMN_1212653 null
ILMN_1212672 9.340193233
ILMN_1212692 null
ILMN_1212693 9.327276017
ILMN_1212702 15.54007732
ILMN_1212703 8.81808282
ILMN_1212717 8.028200217
ILMN_1212720 8.297411699
ILMN_1212759 8.610592477
ILMN_1212794 9.217229504
ILMN_1212835 10.25049325
ILMN_1212875 11.00685866
ILMN_1212894 9.74546859
ILMN_1212902 10.61960238

Total number of rows: 15239

Table truncated, full table size 341 Kbytes.

Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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