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Sample GSM1462831 Query DataSets for GSM1462831
Status Public on Aug 01, 2014
Title Cmah KO_liver _1
Sample type RNA
 
Source name liver from Cmah KO mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Cmah knockout
tissue: liver
age: 12 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified from the liver, lung, kidney, and heart of WT and Cmah-null mice using RNeasy columns (Qiagen; Valencia, CA, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion's Illumina RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jul 31, 2014
Last update date Aug 01, 2014
Contact name Deug-Nam Kwon
E-mail(s) sun-76@daum.net
Phone +82-2-450-3687
Organization name Konkuk University
Street address 1 hwayang-dong, Kwangjin-gu
City Seoul
ZIP/Postal code 143-701
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE59964 Gene expression profile of the Cmah gene depletion on mouse liver, lung, kidney and heart

Data table header descriptions
ID_REF
VALUE quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212612 null
ILMN_1212619 null
ILMN_1212632 8.280611183
ILMN_1212636 11.92916654
ILMN_1212637 10.69219847
ILMN_1212648 8.80469024
ILMN_1212653 null
ILMN_1212672 9.222038185
ILMN_1212692 null
ILMN_1212693 9.226823547
ILMN_1212702 14.23802712
ILMN_1212703 8.760583571
ILMN_1212717 8.171692806
ILMN_1212720 8.457588683
ILMN_1212759 9.002271348
ILMN_1212794 8.922022824
ILMN_1212835 10.55380766
ILMN_1212875 10.79286335
ILMN_1212894 10.28641606
ILMN_1212902 11.17255585

Total number of rows: 15239

Table truncated, full table size 341 Kbytes.




Supplementary data files not provided
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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