|
| Status |
Public on Aug 08, 2014 |
| Title |
Lsk ATAC_seq |
| Sample type |
SRA |
| |
|
| Source name |
Lin-Sca1+Kit- bone marrow cells
|
| Organism |
Mus musculus |
| Characteristics |
cell type: Lin-Sca1+Kit- bone marrow cells
passages: In vivo FACS purified cells
strain: C57BL/6
chip antibody: N/A
|
| Growth protocol |
Cells were sorted by FACS according to stablished markers
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
pelleted by centrifugation
two sets of 9 cycles of PCR using indexing primers from Nextera kit
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 1500 |
| |
|
| Description |
ATAC-seq
|
| Data processing |
Basecalls performed using CASAVA version 1.4
bowtie2 using default parameters
Using uniquely maped tag only
Genome_build: mm9
|
| |
|
| Submission date |
Jul 31, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Ido Amit |
| E-mail(s) |
ido.amit@weizmann.ac.il
|
| Phone |
972-8-9343338
|
| Organization name |
Weizmann Institute of Science
|
| Department |
Immunology
|
| Street address |
234 Herzl st.
|
| City |
Rehovot |
| ZIP/Postal code |
760001 |
| Country |
Israel |
| |
|
| Platform ID |
GPL18480 |
| Series (2) |
| GSE59992 |
Chromatin state dynamics during blood formation (ATAC-seq) |
| GSE60103 |
Chromatin state dynamics during blood formation |
|
| Relations |
| BioSample |
SAMN02949094 |
| SRA |
SRX667509 |
