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Sample GSM1464089 Query DataSets for GSM1464089
Status Public on Aug 15, 2014
Title CN3
Sample type RNA
 
Source name colonic epithelial cells, Clostridia-colonized
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol Colons were dissected, epithelial cells were liberated by treatment with 5mM EDTA
Growth protocol mice in gnotobiotic isolators
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Mini
Label biotin
Label protocol Illumina TotalPrep RNA
 
Hybridization protocol Standard Illumina Protocol
Scan protocol Illumina BeadStudio
Description gnotobiotic animals
Data processing Background subtraction and quantile normalization was performed with Illumina software
Raw or Background-subtracted, quantile normalized intensities from Illumina BeadStudio
 
Submission date Aug 04, 2014
Last update date Aug 15, 2014
Contact name Cathryn Nagler
Organization name University of Chicago
Street address 924 E 57th St
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL6885
Series (1)
GSE60039 Commensal bacteria protect against food allergen sensitization

Data table header descriptions
ID_REF
VALUE quantile normalised signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 902.6 0
ILMN_2721178 138.8 0
ILMN_3033922 44.6 0
ILMN_3092673 1499.8 0
ILMN_2816356 4 0.12907
ILMN_2808939 403.5 0
ILMN_2634564 157.2 0
ILMN_2737647 4.3 0.11529
ILMN_2734484 52 0
ILMN_2952292 71 0
ILMN_2699078 -6.2 0.97368
ILMN_1213681 33.5 0
ILMN_2735413 6 0.05138
ILMN_2735415 10.2 0.00501
ILMN_2891688 259.9 0
ILMN_2637698 890.9 0
ILMN_2674228 52.5 0
ILMN_2601546 3.7 0.1391
ILMN_1230831 1.9 0.23935
ILMN_2848071 5.9 0.05138

Total number of rows: 25697

Table truncated, full table size 590 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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