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Sample GSM1471629 Query DataSets for GSM1471629
Status Public on Oct 15, 2014
Title SK_CD14_DC_X213
Sample type RNA
Source name SK_CD14_DC
Organism Homo sapiens
Characteristics donor id: X213
tissue: Skin
cell subtype: CD14+ dendritic cells (DCs)
Treatment protocol None
Growth protocol Monocytes and dendritic cell subsets were purified by FACS sorting from primary samples for transcription analysis
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen RNeasy Micro RNA kit. Amplification was performed using Nugen Pico Ovation kit.
Label biotin
Label protocol Standard labelling protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description X213.14
Data processing Expression data was exported from Illlumina GenomeStudio software without background subtraction and was then quantile normalized and log (base 2) transformed in R (v. 2.15.2) using Bioconductor (v.2.18.0) lumi (v.2.10.0) package.
Submission date Aug 11, 2014
Last update date Oct 23, 2015
Contact name Kaibo Duan
Organization name Singapore Immunology Network
Street address 8A Biomedical Grove, Immunos Building, Level 4
City Singapore
ZIP/Postal code 138648
Country Singapore
Platform ID GPL6884
Series (1)
GSE60317 Transcriptome profile of human dermal macrophages and monocyte-derived macrophages
Reanalyzed by GSE74316

Data table header descriptions
VALUE Quantile normalized and log (base 2) transformed
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343291 12.75971152 0
ILMN_1343295 11.84101222 0
ILMN_1651199 6.32885637 0.342556
ILMN_1651209 6.27285534 0.4993412
ILMN_1651210 6.394613726 0.229249
ILMN_1651221 6.233340767 0.5928854
ILMN_1651228 13.26794327 0
ILMN_1651229 6.702180973 0.04743083
ILMN_1651230 6.06029707 0.9433465
ILMN_1651232 6.443294856 0.171278
ILMN_1651235 9.073477485 0
ILMN_1651236 6.819696838 0.02635046
ILMN_1651237 6.212492388 0.6469038
ILMN_1651238 5.988593682 0.9815547
ILMN_1651249 6.288232705 0.4519104
ILMN_1651253 6.245959291 0.5691699
ILMN_1651254 10.14901157 0
ILMN_1651259 6.67760458 0.05401845
ILMN_1651260 6.072127906 0.9328063
ILMN_1651262 9.227678423 0

Total number of rows: 48803

Table truncated, full table size 1611 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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