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Sample GSM1471632 Query DataSets for GSM1471632
Status Public on Oct 15, 2014
Title SK_CD14_DC_X239
Sample type RNA
Source name SK_CD14_DC
Organism Homo sapiens
Characteristics donor id: X239
tissue: Skin
cell subtype: CD14+ dendritic cells (DCs)
Treatment protocol None
Growth protocol Monocytes and dendritic cell subsets were purified by FACS sorting from primary samples for transcription analysis
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen RNeasy Micro RNA kit. Amplification was performed using Nugen Pico Ovation kit.
Label biotin
Label protocol Standard labelling protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description X239.14
Data processing Expression data was exported from Illlumina GenomeStudio software without background subtraction and was then quantile normalized and log (base 2) transformed in R (v. 2.15.2) using Bioconductor (v.2.18.0) lumi (v.2.10.0) package.
Submission date Aug 11, 2014
Last update date Oct 23, 2015
Contact name Kaibo Duan
Organization name Singapore Immunology Network
Street address 8A Biomedical Grove, Immunos Building, Level 4
City Singapore
ZIP/Postal code 138648
Country Singapore
Platform ID GPL6884
Series (1)
GSE60317 Transcriptome profile of human dermal macrophages and monocyte-derived macrophages
Reanalyzed by GSE74316

Data table header descriptions
VALUE Quantile normalized and log (base 2) transformed
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343291 13.14868159 0
ILMN_1343295 12.23058447 0
ILMN_1651199 6.291426026 0.4650856
ILMN_1651209 6.193387457 0.7470356
ILMN_1651210 6.330400087 0.3610013
ILMN_1651221 6.154217547 0.8418972
ILMN_1651228 13.75047709 0
ILMN_1651229 7.150861868 0.0171278
ILMN_1651230 6.071881078 0.9459816
ILMN_1651232 6.308350251 0.4084322
ILMN_1651235 9.122770286 0
ILMN_1651236 7.071108554 0.02108037
ILMN_1651237 6.397270314 0.2490119
ILMN_1651238 6.232755265 0.6442688
ILMN_1651249 6.464150507 0.1725955
ILMN_1651253 6.17206265 0.801054
ILMN_1651254 10.76601287 0
ILMN_1651259 6.478257353 0.1594203
ILMN_1651260 6.407521598 0.229249
ILMN_1651262 8.875810299 0

Total number of rows: 48803

Table truncated, full table size 1604 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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