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Sample GSM1471633 Query DataSets for GSM1471633
Status Public on Oct 15, 2014
Title SK_MAC_X218
Sample type RNA
Source name SK_MAC
Organism Homo sapiens
Characteristics donor id: X218
tissue: Skin
cell subtype: Macrophages
Treatment protocol None
Growth protocol Monocytes and dendritic cell subsets were purified by FACS sorting from primary samples for transcription analysis
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen RNeasy Micro RNA kit. Amplification was performed using Nugen Pico Ovation kit.
Label biotin
Label protocol Standard labelling protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description X218.MAC
Data processing Expression data was exported from Illlumina GenomeStudio software without background subtraction and was then quantile normalized and log (base 2) transformed in R (v. 2.15.2) using Bioconductor (v.2.18.0) lumi (v.2.10.0) package.
Submission date Aug 11, 2014
Last update date Oct 23, 2015
Contact name Kaibo Duan
Organization name Singapore Immunology Network
Street address 8A Biomedical Grove, Immunos Building, Level 4
City Singapore
ZIP/Postal code 138648
Country Singapore
Platform ID GPL6884
Series (1)
GSE60317 Transcriptome profile of human dermal macrophages and monocyte-derived macrophages
Reanalyzed by GSE74316

Data table header descriptions
VALUE Quantile normalized and log (base 2) transformed
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343291 12.99973227 0
ILMN_1343295 12.42668877 0
ILMN_1651199 6.179521817 0.7285903
ILMN_1651209 6.281101612 0.4255599
ILMN_1651210 6.345590758 0.2779974
ILMN_1651221 6.482076329 0.1067194
ILMN_1651228 13.48192539 0
ILMN_1651229 7.21808841 0.001317523
ILMN_1651230 6.224585898 0.6100132
ILMN_1651232 6.428512608 0.1633729
ILMN_1651235 8.481264444 0
ILMN_1651236 6.510861681 0.09090909
ILMN_1651237 6.140453652 0.8208169
ILMN_1651238 6.267739239 0.4756258
ILMN_1651249 6.403503328 0.1936759
ILMN_1651253 6.239218482 0.5612648
ILMN_1651254 10.17894614 0
ILMN_1651259 6.575954383 0.05401845
ILMN_1651260 5.9067757 0.9947299
ILMN_1651262 9.606760488 0

Total number of rows: 48803

Table truncated, full table size 1612 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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