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Sample GSM1474240 Query DataSets for GSM1474240
Status Public on Dec 01, 2014
Title C6
Sample type RNA
 
Source name control
Organism Homo sapiens
Characteristics cell type: H tert Fibroblasts
Treatment protocol HTert-immortalized fibroblasts from C1, C6, C16, P1, P2 and P3 were treated with 1000U of IFN-α2b for 12 h, washed with PBS and left to rest for 36 h, after which relative mRNA levels were assessed
Extracted molecule total RNA
Extraction protocol RNAeasy kits from Qiagen
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
 
Hybridization protocol Standard Affymetrix protocol was perfomed
Scan protocol GeneChips were scanned using standard GeneArray Scanner.
Description C6
Data processing Affymetrix Console and TAC
 
Submission date Aug 12, 2014
Last update date Dec 01, 2014
Contact name Dusan Bogunovic
E-mail(s) dusan.bogunovic@mssm.edu
Organization name Icahn School of Medicine at Mount Siani
Department Microbiology
Street address 1468 Madison Avenue,
City New York
State/province New York
ZIP/Postal code 10029
Country USA
 
Platform ID GPL17586
Series (1)
GSE60359 ISG15 in regulation of interferon responses

Data table header descriptions
ID_REF
VALUE log2 rma-gene-full

Data table
ID_REF VALUE
TC01000001.hg.1 6.80429
TC01000002.hg.1 5.76356
TC01000003.hg.1 3.05507
TC01000004.hg.1 3.18188
TC01000005.hg.1 7.8688
TC01000006.hg.1 11.7941
TC01000007.hg.1 11.6093
TC01000008.hg.1 5.8482
TC01000009.hg.1 2.57435
TC01000010.hg.1 4.26325
TC01000011.hg.1 6.58349
TC01000012.hg.1 4.20905
TC01000013.hg.1 9.83956
TC01000014.hg.1 3.19603
TC01000015.hg.1 5.54353
TC01000016.hg.1 4.20884
TC01000017.hg.1 6.30417
TC01000018.hg.1 8.11717
TC01000019.hg.1 6.70817
TC01000020.hg.1 7.4134

Total number of rows: 70523

Table truncated, full table size 1655 Kbytes.




Supplementary file Size Download File type/resource
GSM1474240_4_HTA_2.0_Dusan_08132013_HTA-2_0_.CEL.gz 25.8 Mb (ftp)(http) CEL
GSM1474240_4_HTA_2.0_Dusan_08132013_HTA-2_0_.RMA.rma-gene-full.chp.gz 457.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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