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GEO accession:
Sample GSM147513
Query DataSets for GSM147513
Status
Public on Dec 02, 2006
Title
Lmna H222P heterozygous male 7
Sample type
RNA
Source name
whole heart
Organism
Mus musculus
Characteristics
C57BL6
Extracted molecule
total RNA
Extraction protocol
RNA was extracted using Rneasy kit (QIAGEN)
Label
biotin
Label protocol
standard Affymetrix procedures
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
10 weeks
Data processing
GC-RMA
Submission date
Nov 29, 2006
Last update date
Dec 01, 2006
Contact name
antoine Muchir
E-mail(s)
am2434@columbia.edu
Phone
212 305 4088
Organization name
columbia university
Department
Medicine
Street address
630W 168th street
City
New York
State/province
NY
ZIP/Postal code
10032
Country
USA
Platform ID
GPL1261
Series (2)
GSE6397
Comparison between gene expression in heart from Lmna H222P heterozygous and control mice
GSE8000
Activation of MAPK pathways links LMNA mutations to cardiomyopathy in Emery-Dreifuss muscular dystrophy
Data table header descriptions
ID_REF
VALUE
signal intensity
ABS_CALL
absent or present
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
924.3
P
0.000662
AFFX-BioB-M_at
1251.1
P
0.000044
AFFX-BioB-3_at
951.5
P
0.000044
AFFX-BioC-5_at
3647.6
P
0.000052
AFFX-BioC-3_at
2588.1
P
0.000044
AFFX-BioDn-5_at
4372.5
P
0.000044
AFFX-BioDn-3_at
14388.6
P
0.000044
AFFX-CreX-5_at
26907.2
P
0.000052
AFFX-CreX-3_at
26044.1
P
0.000044
AFFX-DapX-5_at
31.3
A
0.089478
AFFX-DapX-M_at
27.6
A
0.262827
AFFX-DapX-3_at
4.8
A
0.949771
AFFX-LysX-5_at
13.2
A
0.39692
AFFX-LysX-M_at
25.3
A
0.58862
AFFX-LysX-3_at
19.7
A
0.216524
AFFX-PheX-5_at
4.4
A
0.724854
AFFX-PheX-M_at
13.5
A
0.672921
AFFX-PheX-3_at
14.8
A
0.544587
AFFX-ThrX-5_at
13.2
A
0.843268
AFFX-ThrX-M_at
1.7
A
0.814869
Total number of rows:
45101
Table truncated, full table size
1205 Kbytes
.
Supplementary data files not provided
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