|
| Status |
Public on Oct 02, 2014 |
| Title |
TERT-HGPS2 |
| Sample type |
RNA |
| |
|
| Source name |
HGPS dermal fibroblasts from patient 2 immortalized by retroviral introduction of TERT
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: HGPS dermal fibroblasts from patient 2 immortalized by retroviral introduction of TERT
|
| Treatment protocol |
Not applicable
|
| Growth protocol |
Not applicable
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using the RNAeasy kit (Qiagen)
|
| Label |
Biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Data processing |
CEL files from Affymetrix were imported into Partek Genomics Suite (Partek Incorporated) and RMA normalized. Analysis of variance (ANOVA) with false discovery correction (FDR) was performed and differentially expressed genes (DEG) were defined as genes having ≥ 2-fold change of expression in pair-wise comparisons, with an FDR-corrected P value <0.05, unless otherwise stated (unadjusted p value).
|
| |
|
| Submission date |
Aug 19, 2014 |
| Last update date |
Oct 02, 2014 |
| Contact name |
Patricia Fernandez Ferri |
| E-mail(s) |
patricia.fernandezferri@nih.gov
|
| Phone |
+1 301 435 3552
|
| Organization name |
NCI/NIH
|
| Street address |
41 Library Drive, B513
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE60518 |
Expression data from immortalized and transformed WT and HGPS cell lines |
|
