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Sample GSM1483649 Query DataSets for GSM1483649
Status Public on Jul 24, 2020
Title Primary Tumor GFP Plus 2
Sample type RNA
 
Source name Primary Tumor GFP Plus
Organism Mus musculus
Characteristics strain: nu/nu
gender: Female
tissue: Isolated Orthotopic Primary Tumor Tumor Cells
cell genotype: MMTV-rtTA;TetO-HER2/neu
treatment: Untreated
time point: Primary Tumor
Treatment protocol Doxycycline withdrawal was used in order to inactivate oncogene and lead to tumor regression
Growth protocol H2B-eGFP-labeled tumor cells were grown orthotopically in nu/nu mice on doxycycline
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Affymetrix Generic Hybridization
Scan protocol Arrays were scanned using the Affymetrix GeneArray Scanner
Data processing RMA using Brainarray custom CDF, mogene10st_Mm_ENTREZG; R 3.0.2
 
Submission date Aug 21, 2014
Last update date Jul 24, 2020
Contact name Lewis Chodosh
E-mail(s) chodosh@pennmedicine.upenn.edu
Phone (215) 898-1321
Organization name University of Pennsylvania
Department Cancer Biology
Lab Chodosh
Street address 421 Curie Blvd
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
 
Platform ID GPL19103
Series (2)
GSE60609 In vivo isolated HER2/neu-Prim1 Primary, Residual, and Recurrent Tumor Cells, and Recurrent Tumor Stromal Cells
GSE60611 Tumor cells that survive oncogenic pathway inhibition exhibit cellular dormancy

Data table header descriptions
ID_REF
VALUE Normalized signal (log2 scale)

Data table
ID_REF VALUE
100008567_at 4.289407641
100009600_at 3.222026093
100009609_at 2.149835885
100009614_at 5.289132456
100012_at 3.348136768
100017_at 4.700681824
100019_at 5.704973024
100033459_at 2.959652643
100034251_at 5.372337087
100034748_at 4.961872317
100036520_at 4.119061834
100036521_at 3.136101734
100036523_at 5.377336215
100036537_at 4.622858188
100036768_at 3.790972496
100037258_at 8.637799511
100037260_at 5.055463868
100037262_at 4.619301304
100037278_at 4.707618665
100037396_at 3.313280033

Total number of rows: 21266

Table truncated, full table size 444 Kbytes.




Supplementary file Size Download File type/resource
GSM1483649_2_MoGene1ST_073012_MoGene-1_0-st-v1_.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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