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Sample GSM1483665 Query DataSets for GSM1483665
Status Public on Jul 24, 2020
Title Wnt1 GFP plus Primary 3
Sample type RNA
 
Source name Wnt1_gfp_Primary
Organism Mus musculus
Characteristics strain: nu/nu
gender: Female
tissue: Isolated Orthotopic Primary Tumor Tumor Cells
cell genotype: MMTV-rtTA;TetO-Wnt1
treatment: Untreated
time point: Primary Tumor
Treatment protocol Doxycycline withdrawal was used in order to inactivate oncogene and lead to tumor regression
Growth protocol H2B-eGFP-labeled tumor cells were grown orthotopically in nu/nu mice on doxycycline
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Affymetrix Generic Hybridization
Scan protocol Arrays were scanned using the Affymetrix GeneArray Scanner
Data processing RMA using Brainarray custom CDF, mogene20st_Mm_ENTREZG; R 3.0.2
 
Submission date Aug 21, 2014
Last update date Jul 24, 2020
Contact name Dhruv K Pant
E-mail(s) dpant@pennmedicine.upenn.edu
Phone 9083381849
Organization name University of Pennsylvania
Department Cancer Biology
Lab Chodosh
Street address 421 Curie Blvd
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
 
Platform ID GPL18802
Series (2)
GSE60610 In vivo isolated Wnt1-Prim1 Primary, Residual, and Recurrent Tumor Cells
GSE60611 Tumor cells that survive oncogenic pathway inhibition exhibit cellular dormancy

Data table header descriptions
ID_REF
VALUE Normalized signal (log2 scale)

Data table
ID_REF VALUE
100008567_at 3.783439122
100009600_at 3.176281284
100009609_at 2.11042588
100009614_at 3.028983055
100009664_at 3.125817563
100012_at 2.773223029
100017_at 5.895490676
100019_at 6.777439984
100033459_at 1.986984141
100034251_at 6.389056727
100034729_at 2.654021767
100034739_at 4.093211095
100034748_at 4.283188333
100036518_at 1.828127969
100036520_at 3.01731435
100036521_at 4.659986588
100036523_at 5.344997248
100036537_at 6.333104348
100036768_at 4.063718236
100037258_at 9.590917955

Total number of rows: 24479

Table truncated, full table size 515 Kbytes.




Supplementary file Size Download File type/resource
GSM1483665_P4_MoGene-2_0-st_.CEL.gz 8.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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