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Sample GSM14918 Query DataSets for GSM14918
Status Public on Jan 14, 2004
Title AT dermal fibroblasts
Sample type SAGE
Anchor NlaIII
Tag Count 64443
Tag Length 10
 
Source name A-T homozygous skin fibroblast cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description AT skin primary fibroblasts (AG 04405 strain from the National Institute of Aging Cell Culture Repository) were cultured in Ham's F10 medium supplemented with 10% fetal bovine serum, 100 U/ml penicillin, and 100 ug/ml streptomycin. The population doubling (PD) of cells chosen for SAGE library construction was PD=21. The cells were ~80% confluent at the time of RNA isolation.
 
Submission date Jan 07, 2004
Last update date Nov 19, 2008
Contact name Agnes Baross
E-mail(s) abaross@bcgsc.ca
Phone 604-877-6000/ ext. 3267
Fax 604-877-6085
Organization name British Columbia Cancer Agency
Lab British Columbia Genome Sciences Centre
Street address 600 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 4E6
Country Canada
 
Platform ID GPL4
Series (1)
GSE953 Effect of TERT and ATM on Gene Expression Profiles in Human Fibroblasts

Data table header descriptions
TAG linker sequences are excluded
COUNT duplicate ditags are excluded
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 263 4081.13
AAAAAAAAAC 2 31.04
AAAAAAAAAG 5 77.59
AAAAAAAAAT 1 15.52
AAAAAAAACA 1 15.52
AAAAAAAAGA 1 15.52
AAAAAAAATA 1 15.52
AAAAAAACAA 2 31.04
AAAAAAACCC 1 15.52
AAAAAAAGAA 2 31.04
AAAAAAAGCA 1 15.52
AAAAAAAGGT 1 15.52
AAAAAAATCA 4 62.07
AAAAAAATTT 1 15.52
AAAAAACACA 1 15.52
AAAAAACATT 1 15.52
AAAAAACCCA 7 108.62
AAAAAACTCC 9 139.66
AAAAAACTTT 2 31.04
AAAAAAGAGT 1 15.52

Total number of rows: 21345

Table truncated, full table size 398 Kbytes.




Supplementary data files not provided

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