GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM149225
Query DataSets for GSM149225
Status
Public on Jan 01, 2007
Title
mEC-V 1
Sample type
RNA
Source name
mEC-V 1
Organism
Mus musculus
Characteristics
Mouse EC cells transfected with empty-BAC. Control sample number 1
Extracted molecule
total RNA
Extraction protocol
RNA extration using TRIzol reagent. (
http://www.invitrogen.com/content/sfs/manuals/15596026.pdf
) and purified using Qiagen Rneasy Mini Kit (
http://www1.qiagen.com/literature/protocols/pdf/RY20.pdf
)
Label
Biotin
Label protocol
Standard affymetrix protocol
http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Hybridization protocol
Standard affymetrix protocol
http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Scan protocol
Standard affymetrix protocol-GeneChip Scanner 3000 using the protocol
http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Description
Mouse EC cells transfected with empty-BAC. Control sample number 1
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Dec 07, 2006
Last update date
Aug 28, 2018
Contact name
Enrique Mesri
E-mail(s)
emesri@med.miami.edu
Phone
305-243-5659
Organization name
University of Miami
Department
Microbiology and Immunology
Street address
1550 NW 10th Ave, PAP-109B
City
Miami
State/province
FL
ZIP/Postal code
33136
Country
USA
Platform ID
GPL1261
Series (1)
GSE6482
mECK36: a cell and animal model of virally induced Kaposi's sarcoma
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
Affymetrix MAS 5.0 signal intensity
ABS_CALL
Affymetrix MAS 5.0 detection call
DETECTION P-VALUE
Affymetrix MAS 5.0 detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
572.1
P
0.000857
AFFX-BioB-M_at
972.4
P
0.000754
AFFX-BioB-3_at
316.4
P
0.00007
AFFX-BioC-5_at
1496.8
P
0.00007
AFFX-BioC-3_at
1566.7
P
0.000044
AFFX-BioDn-5_at
2226
P
0.000052
AFFX-BioDn-3_at
6646
P
0.00006
AFFX-CreX-5_at
24164.6
P
0.000052
AFFX-CreX-3_at
27001
P
0.000044
AFFX-DapX-5_at
4
A
0.686277
AFFX-DapX-M_at
8.1
A
0.672921
AFFX-DapX-3_at
5.1
A
0.932339
AFFX-LysX-5_at
4
A
0.617411
AFFX-LysX-M_at
7.2
A
0.897835
AFFX-LysX-3_at
17.9
A
0.287743
AFFX-PheX-5_at
10.3
A
0.712257
AFFX-PheX-M_at
15
A
0.5
AFFX-PheX-3_at
7.4
A
0.9273
AFFX-ThrX-5_at
7.3
A
0.904333
AFFX-ThrX-M_at
15.9
A
0.749204
Total number of rows:
45101
Table truncated, full table size
1207 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM149225.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|