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Sample GSM149225 Query DataSets for GSM149225
Status Public on Jan 01, 2007
Title mEC-V 1
Sample type RNA
 
Source name mEC-V 1
Organism Mus musculus
Characteristics Mouse EC cells transfected with empty-BAC. Control sample number 1
Extracted molecule total RNA
Extraction protocol RNA extration using TRIzol reagent. (http://www.invitrogen.com/content/sfs/manuals/15596026.pdf) and purified using Qiagen Rneasy Mini Kit (http://www1.qiagen.com/literature/protocols/pdf/RY20.pdf)
Label Biotin
Label protocol Standard affymetrix protocol http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
 
Hybridization protocol Standard affymetrix protocol
http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Scan protocol Standard affymetrix protocol-GeneChip Scanner 3000 using the protocol http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Description Mouse EC cells transfected with empty-BAC. Control sample number 1
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 07, 2006
Last update date Aug 28, 2018
Contact name Enrique Mesri
E-mail(s) emesri@med.miami.edu
Phone 305-243-5659
Organization name University of Miami
Department Microbiology and Immunology
Street address 1550 NW 10th Ave, PAP-109B
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL1261
Series (1)
GSE6482 mECK36: a cell and animal model of virally induced Kaposi's sarcoma
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Affymetrix MAS 5.0 signal intensity
ABS_CALL Affymetrix MAS 5.0 detection call
DETECTION P-VALUE Affymetrix MAS 5.0 detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 572.1 P 0.000857
AFFX-BioB-M_at 972.4 P 0.000754
AFFX-BioB-3_at 316.4 P 0.00007
AFFX-BioC-5_at 1496.8 P 0.00007
AFFX-BioC-3_at 1566.7 P 0.000044
AFFX-BioDn-5_at 2226 P 0.000052
AFFX-BioDn-3_at 6646 P 0.00006
AFFX-CreX-5_at 24164.6 P 0.000052
AFFX-CreX-3_at 27001 P 0.000044
AFFX-DapX-5_at 4 A 0.686277
AFFX-DapX-M_at 8.1 A 0.672921
AFFX-DapX-3_at 5.1 A 0.932339
AFFX-LysX-5_at 4 A 0.617411
AFFX-LysX-M_at 7.2 A 0.897835
AFFX-LysX-3_at 17.9 A 0.287743
AFFX-PheX-5_at 10.3 A 0.712257
AFFX-PheX-M_at 15 A 0.5
AFFX-PheX-3_at 7.4 A 0.9273
AFFX-ThrX-5_at 7.3 A 0.904333
AFFX-ThrX-M_at 15.9 A 0.749204

Total number of rows: 45101

Table truncated, full table size 1207 Kbytes.




Supplementary file Size Download File type/resource
GSM149225.CEL.gz 3.2 Mb (ftp)(http) CEL

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