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Sample GSM149228 Query DataSets for GSM149228
Status Public on Jan 01, 2007
Title mKS1
Sample type RNA
 
Source name mKS1
Organism Mus musculus
Characteristics Mouse KS tumor. Sample number 1
Extracted molecule total RNA
Extraction protocol RNA extration using TRIzol reagent(http://www.invitrogen.com/content/sfs/manuals/15596026.pdf) and purified using Qiagen Rneasy Mini Kit (http://www1.qiagen.com/literature/protocols/pdf/RY20.pdf)
Label Biotin
Label protocol Standard affymetrix protocol http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
 
Hybridization protocol Standard affymetrix protocol http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Scan protocol Standard affymetrix protocol-GeneChip Scanner 3000 using the protocol http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Description Mouse KS tumor. Sample number 1
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 07, 2006
Last update date Aug 28, 2018
Contact name Enrique Mesri
E-mail(s) emesri@med.miami.edu
Phone 305-243-5659
Organization name University of Miami
Department Microbiology and Immunology
Street address 1550 NW 10th Ave, PAP-109B
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL1261
Series (1)
GSE6482 mECK36: a cell and animal model of virally induced Kaposi's sarcoma
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Affymetrix MAS 5.0 signal intensity
ABS_CALL Affymetrix MAS 5.0 detection call
DETECTION P-VALUE Affymetrix MAS 5.0 detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 194.7 P 0.004484
AFFX-BioB-M_at 272.1 P 0.001102
AFFX-BioB-3_at 128.4 P 0.01667
AFFX-BioC-5_at 602.2 P 0.000147
AFFX-BioC-3_at 634 P 0.00006
AFFX-BioDn-5_at 964.1 P 0.000052
AFFX-BioDn-3_at 2370.7 P 0.00039
AFFX-CreX-5_at 6361.7 P 0.000052
AFFX-CreX-3_at 7707.3 P 0.000044
AFFX-DapX-5_at 12.9 A 0.340661
AFFX-DapX-M_at 23.6 A 0.262827
AFFX-DapX-3_at 8.3 A 0.783476
AFFX-LysX-5_at 4.3 A 0.52976
AFFX-LysX-M_at 38.8 A 0.574038
AFFX-LysX-3_at 18 P 0.004998
AFFX-PheX-5_at 2.9 A 0.910522
AFFX-PheX-M_at 3.9 A 0.916408
AFFX-PheX-3_at 13.3 A 0.737173
AFFX-ThrX-5_at 34.1 A 0.559354
AFFX-ThrX-M_at 15.3 A 0.631562

Total number of rows: 45101

Table truncated, full table size 1208 Kbytes.




Supplementary file Size Download File type/resource
GSM149228.CEL.gz 3.9 Mb (ftp)(http) CEL

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