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Sample GSM150207 Query DataSets for GSM150207
Status Public on May 01, 2007
Title ESE_D_599
Sample type RNA
 
Source name uterus - Early secretory endometrium from patient with endometriosis
Organism Homo sapiens
Characteristics Early Secretory Phase Endometriosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
 
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Early secretory endometrium from patient with endometriosis
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
E-mail(s) giudice@obgyn.ucsf.edu
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
 
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1319.1 P 0.000509
AFFX-BioB-M_at 1909.7 P 0.000044
AFFX-BioB-3_at 910 P 0.000044
AFFX-BioC-5_at 3860.6 P 0.000044
AFFX-BioC-3_at 4984.5 P 0.000044
AFFX-BioDn-5_at 6949.6 P 0.000044
AFFX-BioDn-3_at 17760.6 P 0.000044
AFFX-CreX-5_at 31797.7 P 0.000052
AFFX-CreX-3_at 35628.2 P 0.000044
AFFX-DapX-5_at 47.4 M 0.054198
AFFX-DapX-M_at 51.4 A 0.470241
AFFX-DapX-3_at 6.8 A 0.981719
AFFX-LysX-5_at 19.4 A 0.48511
AFFX-LysX-M_at 34.8 A 0.588627
AFFX-LysX-3_at 44.5 A 0.116092
AFFX-PheX-5_at 3.2 A 0.9273
AFFX-PheX-M_at 4.5 A 0.960339
AFFX-PheX-3_at 24.2 A 0.672921
AFFX-ThrX-5_at 14 A 0.588627
AFFX-ThrX-M_at 32.7 A 0.425962

Total number of rows: 54675

Table truncated, full table size 1452 Kbytes.




Supplementary file Size Download File type/resource
GSM150207.CEL.gz 5.0 Mb (ftp)(http) CEL

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