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Sample GSM1509764 Query DataSets for GSM1509764
Status Public on Mar 01, 2015
Title iKOPGC-1β 5
Sample type RNA
 
Source name mouse ileum 5
Organism Mus musculus
Characteristics strain: c57/Blk6
age: 3-4 months old
tissue: ileum
genotype/variation: iKOPGC-1β
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
 
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
E-mail(s) elena.bellafante@kcl.ac.uk
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL6885
Series (2)
GSE61640 Genome-wide analysis expression of ileum samples from PGC-1β fl/? and iKOPGC-1β
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1689 0
ILMN_2721178 485.1 0
ILMN_3033922 378 0
ILMN_3092673 2514.6 0
ILMN_2816356 123.1 0.05138
ILMN_2808939 1535.3 0
ILMN_2634564 285.8 0
ILMN_2737647 123.6 0.04386
ILMN_2734484 267.9 0
ILMN_2952292 175.3 0
ILMN_2699078 103.9 0.81203
ILMN_1213681 230.2 0
ILMN_2735413 117.1 0.14411
ILMN_2735415 106.7 0.6416
ILMN_2891688 350.2 0
ILMN_2637698 1164.1 0
ILMN_2674228 266.3 0
ILMN_2601546 108.1 0.56642
ILMN_1230831 108.8 0.52632
ILMN_2848071 104.2 0.79449

Total number of rows: 25697

Table truncated, full table size 618 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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