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Sample GSM1509772 Query DataSets for GSM1509772
Status Public on Mar 01, 2015
Title FVBN 5
Sample type RNA
 
Source name mouse ileum 5
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum
genotype/variation: wild-type
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
 
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
E-mail(s) elena.bellafante@kcl.ac.uk
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL6885
Series (2)
GSE61641 Genome-wide analysis expression of ileum samples from wild-type and iPGC-1β
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1877 0
ILMN_2721178 644 0
ILMN_3033922 847.1 0
ILMN_3092673 3080.4 0
ILMN_2816356 153.1 0.01253
ILMN_2808939 1392.4 0
ILMN_2634564 369.2 0
ILMN_2737647 133.1 0.19173
ILMN_2734484 455.2 0
ILMN_2952292 245.6 0
ILMN_2699078 120.4 0.66917
ILMN_1213681 242 0
ILMN_2735413 116 0.83208
ILMN_2735415 132.9 0.19549
ILMN_2891688 636.9 0
ILMN_2637698 968.8 0
ILMN_2674228 335 0
ILMN_2601546 131.7 0.2193
ILMN_1230831 142.9 0.05639
ILMN_2848071 130.7 0.25063

Total number of rows: 25697

Table truncated, full table size 616 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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