NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1509773 Query DataSets for GSM1509773
Status Public on Mar 01, 2015
Title iPGC-1β 6
Sample type RNA
 
Source name mouse ileum 6
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum
genotype/variation: iPGC-1β
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
 
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
E-mail(s) elena.bellafante@kcl.ac.uk
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL6885
Series (2)
GSE61641 Genome-wide analysis expression of ileum samples from wild-type and iPGC-1β
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1493 0
ILMN_2721178 490.4 0
ILMN_3033922 1090 0
ILMN_3092673 4155.4 0
ILMN_2816356 147.2 0.03258
ILMN_2808939 1159.2 0
ILMN_2634564 301 0
ILMN_2737647 139.6 0.07895
ILMN_2734484 700 0
ILMN_2952292 233.7 0
ILMN_2699078 144.2 0.04386
ILMN_1213681 329.4 0
ILMN_2735413 118.2 0.74687
ILMN_2735415 129.4 0.28822
ILMN_2891688 1272.2 0
ILMN_2637698 1139.7 0
ILMN_2674228 225.2 0
ILMN_2601546 158.8 0.01003
ILMN_1230831 113 0.90852
ILMN_2848071 514.2 0

Total number of rows: 25697

Table truncated, full table size 622 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap