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Sample GSM1509779 Query DataSets for GSM1509779
Status Public on Mar 01, 2015
Title FVBN/APCmin 2
Sample type RNA
 
Source name mouse ileum tumor 2
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum tumor
genotype/variation: FVBN/APCmin
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
 
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
E-mail(s) elena.bellafante@kcl.ac.uk
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL6885
Series (2)
GSE61642 Genome-wide analysis expression of ileum tumor samples from FVBN/APCmin and iPGC-1β/APCmin
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1576.4 0
ILMN_2721178 611.3 0
ILMN_3033922 1299.3 0
ILMN_3092673 4545.9 0
ILMN_2816356 133.9 0.38095
ILMN_2808939 1480.9 0
ILMN_2634564 570.9 0
ILMN_2737647 132.7 0.43233
ILMN_2734484 443.4 0
ILMN_2952292 222.4 0
ILMN_2699078 142 0.14912
ILMN_1213681 323.7 0
ILMN_2735413 132.9 0.42105
ILMN_2735415 119.2 0.94486
ILMN_2891688 1095.9 0
ILMN_2637698 1262 0
ILMN_2674228 319 0
ILMN_2601546 144 0.10902
ILMN_1230831 125.4 0.76316
ILMN_2848071 150.3 0.05138

Total number of rows: 25697

Table truncated, full table size 608 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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