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Sample GSM1509780 Query DataSets for GSM1509780
Status Public on Mar 01, 2015
Title FVBN/APCmin 3
Sample type RNA
Source name mouse ileum tumor 3
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum tumor
genotype/variation: FVBN/APCmin
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
Platform ID GPL6885
Series (2)
GSE61642 Genome-wide analysis expression of ileum tumor samples from FVBN/APCmin and iPGC-1β/APCmin
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1417.7 0
ILMN_2721178 479.2 0
ILMN_3033922 681.6 0
ILMN_3092673 2684.5 0
ILMN_2816356 187.1 0
ILMN_2808939 1111.2 0
ILMN_2634564 412.8 0
ILMN_2737647 128.5 0.60025
ILMN_2734484 303.1 0
ILMN_2952292 201.8 0
ILMN_2699078 139 0.20677
ILMN_1213681 320.2 0
ILMN_2735413 134.2 0.35714
ILMN_2735415 139.4 0.19674
ILMN_2891688 671 0
ILMN_2637698 1642.9 0
ILMN_2674228 282.8 0
ILMN_2601546 140.8 0.16792
ILMN_1230831 135 0.34211
ILMN_2848071 135.7 0.31955

Total number of rows: 25697

Table truncated, full table size 608 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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