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Sample GSM1509782 Query DataSets for GSM1509782
Status Public on Mar 01, 2015
Title FVBN/APCmin 5
Sample type RNA
Source name mouse ileum tumor 5
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum tumor
genotype/variation: FVBN/APCmin
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
Platform ID GPL6885
Series (2)
GSE61642 Genome-wide analysis expression of ileum tumor samples from FVBN/APCmin and iPGC-1β/APCmin
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1731.3 0
ILMN_2721178 606.4 0
ILMN_3033922 836.6 0
ILMN_3092673 3479.2 0
ILMN_2816356 153.2 0.03634
ILMN_2808939 1983 0
ILMN_2634564 418.1 0
ILMN_2737647 133.6 0.40226
ILMN_2734484 446.5 0
ILMN_2952292 220.4 0
ILMN_2699078 131 0.51504
ILMN_1213681 292.7 0
ILMN_2735413 124.8 0.80326
ILMN_2735415 140 0.19298
ILMN_2891688 797.5 0
ILMN_2637698 1412.8 0
ILMN_2674228 326.7 0
ILMN_2601546 133.8 0.3985
ILMN_1230831 125.9 0.75439
ILMN_2848071 149.3 0.06015

Total number of rows: 25697

Table truncated, full table size 606 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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