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Sample GSM1509785 Query DataSets for GSM1509785
Status Public on Mar 01, 2015
Title iPGC-1β/APCmin 8
Sample type RNA
 
Source name mouse ileum tumor 8
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum tumor
genotype/variation: iPGC-1β/APCmin
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
 
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
E-mail(s) elena.bellafante@kcl.ac.uk
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL6885
Series (2)
GSE61642 Genome-wide analysis expression of ileum tumor samples from FVBN/APCmin and iPGC-1β/APCmin
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
ID_REF
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1290.5 0
ILMN_2721178 396.9 0
ILMN_3033922 815.7 0
ILMN_3092673 2894.1 0
ILMN_2816356 143.3 0.15414
ILMN_2808939 1231.6 0
ILMN_2634564 358.1 0
ILMN_2737647 137 0.29825
ILMN_2734484 565.4 0
ILMN_2952292 232.2 0
ILMN_2699078 134.5 0.38221
ILMN_1213681 514 0
ILMN_2735413 128.9 0.6203
ILMN_2735415 137.8 0.2782
ILMN_2891688 1271.7 0
ILMN_2637698 2243.1 0
ILMN_2674228 231.2 0
ILMN_2601546 144.4 0.1416
ILMN_1230831 144.9 0.13283
ILMN_2848071 614.6 0

Total number of rows: 25697

Table truncated, full table size 620 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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