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Sample GSM1509787 Query DataSets for GSM1509787
Status Public on Mar 01, 2015
Title iPGC-1β/APCmin 10
Sample type RNA
Source name mouse ileum tumor 10
Organism Mus musculus
Characteristics strain: FVB/N
age: 3-4 months old
tissue: ileum tumor
genotype/variation: iPGC-1β/APCmin
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
Submission date Sep 22, 2014
Last update date Mar 01, 2015
Contact name Elena Bellafante
Organization name KCL
Department Women's Health
Lab Fetal and Maternal Disease
Street address Guy's Campus
City London
ZIP/Postal code SE11UL
Country United Kingdom
Platform ID GPL6885
Series (2)
GSE61642 Genome-wide analysis expression of ileum tumor samples from FVBN/APCmin and iPGC-1β/APCmin
GSE61643 PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine

Data table header descriptions
VALUE Quantile Normalized AVG signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2546.3 0
ILMN_2721178 820.6 0
ILMN_3033922 925.6 0
ILMN_3092673 3894.2 0
ILMN_2816356 139.6 0.24812
ILMN_2808939 1458.1 0
ILMN_2634564 487.4 0
ILMN_2737647 162.1 0.02506
ILMN_2734484 761.8 0
ILMN_2952292 220.9 0
ILMN_2699078 130.4 0.54637
ILMN_1213681 477.6 0
ILMN_2735413 133.3 0.43734
ILMN_2735415 125.3 0.74561
ILMN_2891688 1678.2 0
ILMN_2637698 1524 0
ILMN_2674228 372.1 0
ILMN_2601546 163 0.02381
ILMN_1230831 122.3 0.85965
ILMN_2848071 377 0

Total number of rows: 25697

Table truncated, full table size 612 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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